Add known sites

Author

Cox Lab

Published

November 15, 2023

1 General

Type: - Matrix Processing
Heading: - Modifications
Source code: AddKnownSites.cs

2 Brief description

Sites that are known in PhosphoSitePlus are indicated.

3 Parameters

3.1 Modification

Selected modification for which the known sites should be added (default: Phosphorylation). The modification can be selected from a predefined list:

Acetylation
Methylation
O-GlcNAc
Phosphorylation
Sumoyalation
Ubiquitination

3.2 Uniprot column

Selected text column that contains the Uniprot identifiers (default: first text column in the matrix).

3.3 Sequence column

Selected text column that contains the sequence windows around the sites (default: first text column in the matrix).

4 Parameter window