Add linear motifs


Cox Lab


November 15, 2023

1 General

  • Type: - Matrix Processing
  • Heading: - Modifications
  • Source code: not public.

2 Brief description

Given a column containing the sequence window centered around modification sites, linear motifs are matched to these sequences and a potential kinase or binding partner is suggested. The motifs are defined in the File conf\motifs.txt

Output: Same matrix with a categorical column added which contains the kinases or binding partners which are recognized based on the linear sequence motif.

3 Parameters

3.1 Sequence window

Selected text column that contains the sequence windows around the sites (default: first text column in the matrix).

4 Parameter window