Add modification counts

Author

Cox Lab

Published

November 15, 2023

1 General

Type: - Matrix Processing
Heading: - Modifications
Source code: AddModificationCounts.cs

2 Brief description

Count how many modifications are known in PSP for the specified modification type(s).

Output: A numerical column is added containing the number of modifications for the given protein.

3 Parameters

3.1 Modifications

Selected modifications for which the corresponding sites are counted (default: all modifications are selected). The list of modifications includes:

Acetylation
Methylation
O-GlcNAc
Phosphorylation
Sumoyalation
Ubiquitination

3.2 Uniprot column

Selected text column that contains the Uniprot identifiers (default: first text column in the matrix).

4 Parameter window