Shorten motif length


Cox Lab


March 18, 2024

1 General

  • Type: - Matrix Processing
  • Heading: - Modifications
  • Source code: ShortenMotifs.cs

2 Brief description

Sequence windows are shortened based on start and length parameters.

3 Parameters

3.1 Sequence window

Selected text column that contains the amino acid sequences (default: first text column in the matrix).

3.2 Start

Start position of the newly generated shorter sequences, which are displayed in a new generated text column called “Short sequence window” (default: 6). The flanks will be measured with respect to this position.

Hint: Start + Length cannot exceed the length of any protein sequence in the selected text column.

3.3 Length

Length of the newly generated sequences (default: 11). Flanking regions of this length will be kept surrounding the central position.

4 Parameter window