Andromeda Configurations


Cox Lab


November 15, 2023

The Andromeda search engine1 offers a large variety of already defined modifications, proteases and sequence databases. But sometimes for specialized studies additional configurations are necessary. Therefore it is possible to configure the search engine according to special needs. You can add, remove, duplicate or modify modifications, enzymes and protein sequence databases. Also rearranging the order in the lists is possible to e.g. easier compare things. This rearrangements have no effect on the later analyses.

On the following pages are step by step descriptions how to configure…

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Cox, J. et al. Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 10, 1794–1805 (2011).